Genome sequencing and characterization analysis of a Beijing isolate of chicken coronavirus infectious bronchitis virus.
Identifieur interne : 005340 ( Main/Exploration ); précédent : 005339; suivant : 005341Genome sequencing and characterization analysis of a Beijing isolate of chicken coronavirus infectious bronchitis virus.
Auteurs : Weiwu Jin [République populaire de Chine] ; Chen Chen [République populaire de Chine] ; Ying Zhang [République populaire de Chine] ; Yiqiang Zhao [République populaire de Chine] ; Jidong Feng [République populaire de Chine] ; Fuyong Chen [République populaire de Chine] ; Qingming Wu [République populaire de Chine] ; Hanchun Yang [République populaire de Chine] ; Ming Wang [République populaire de Chine] ; Jialin Yu [République populaire de Chine] ; Ning Li [République populaire de Chine] ; Yuanshi Gong [République populaire de Chine] ; Qixin Sun [République populaire de Chine] ; Zhangliang Chen [République populaire de Chine]Source :
- Chinese science bulletin = Kexue tongbao [ 1001-6538 ] ; 2004.
Abstract
Avian infectious bronchitis virus (AIBV) is classified as a member of the genus coronavirus in the family coronaviridae. The enveloped virus has a positive-sense, single-stranded RNA genome of approximately 28 kilo-bases, which has a 5' cap structure and 3' polyadenylation tract. The complete genome sequence of infectious bronchitis virus (IBV), Beijing isolate, was determined by cloning sequencing and primer walking. The whole genome is 27733 nucleotides in length, has ten open reading frames: 5' -orf1a-orf1ab-s-3a-3b-e-m-6a-6b-n-3'. Alignments of the genome sequence of IBV Beijing isolate with those of two AIBV strains and one SARS coronavirus were performed respectively. The genome sequence of IBV Beijing isolate compared with that of the IBV strain LX4 (uncompleted, 19440 bp in size) was 91.2% similarity. However, the full-length genome sequence of IBV Beijing isolate was 85.2% identity to that of IBV Strain Beaudette, and was only 50.8% homology to that of SARS coronavirus. The results showed that the genome of IBV has remarkable variation. And IBV Beijing isolate is not closely related to SARS coronavirus. Phylogenetic analyses based on the whole genome sequence, S protein, M protein and N protein, also showed that AIBV Beijing isolate is lone virus in group III and is distant from SARS coronavirus. In conclusion, this study will contribute to the studies of diagnosis and diseases control on IBV in China.
DOI: 10.1360/03wc0347
PubMed: 32214717
Affiliations:
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Hanchun" sort="Yang, Hanchun" uniqKey="Yang H" first="Hanchun" last="Yang">Hanchun Yang</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Ming" sort="Wang, Ming" uniqKey="Wang M" first="Ming" last="Wang">Ming Wang</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement 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Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Gong, Yuanshi" sort="Gong, Yuanshi" uniqKey="Gong Y" first="Yuanshi" last="Gong">Yuanshi Gong</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sun, Qixin" sort="Sun, Qixin" uniqKey="Sun Q" first="Qixin" last="Sun">Qixin Sun</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de 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bronchitis virus.</title><author><name sortKey="Jin, Weiwu" sort="Jin, Weiwu" uniqKey="Jin W" first="Weiwu" last="Jin">Weiwu Jin</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Chen" sort="Chen, Chen" uniqKey="Chen C" first="Chen" last="Chen">Chen Chen</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Ying" sort="Zhang, Ying" uniqKey="Zhang Y" first="Ying" last="Zhang">Ying Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhao, Yiqiang" sort="Zhao, Yiqiang" uniqKey="Zhao Y" first="Yiqiang" last="Zhao">Yiqiang Zhao</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Feng, Jidong" sort="Feng, Jidong" uniqKey="Feng J" first="Jidong" last="Feng">Jidong Feng</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Fuyong" sort="Chen, Fuyong" uniqKey="Chen F" first="Fuyong" last="Chen">Fuyong Chen</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wu, Qingming" sort="Wu, Qingming" uniqKey="Wu Q" first="Qingming" last="Wu">Qingming Wu</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Yang, Hanchun" sort="Yang, Hanchun" uniqKey="Yang H" first="Hanchun" last="Yang">Hanchun Yang</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Ming" sort="Wang, Ming" uniqKey="Wang M" first="Ming" last="Wang">Ming Wang</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Yu, Jialin" sort="Yu, Jialin" uniqKey="Yu J" first="Jialin" last="Yu">Jialin Yu</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Li, Ning" sort="Li, Ning" uniqKey="Li N" first="Ning" last="Li">Ning Li</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Gong, Yuanshi" sort="Gong, Yuanshi" uniqKey="Gong Y" first="Yuanshi" last="Gong">Yuanshi Gong</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Sun, Qixin" sort="Sun, Qixin" uniqKey="Sun Q" first="Qixin" last="Sun">Qixin Sun</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Zhangliang" sort="Chen, Zhangliang" uniqKey="Chen Z" first="Zhangliang" last="Chen">Zhangliang Chen</name><affiliation wicri:level="1"><nlm:affiliation>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Animal Coronavirus Research Group, China Agricultural University, 100094 Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">Chinese science bulletin = Kexue tongbao</title><idno type="ISSN">1001-6538</idno><imprint><date when="2004" type="published">2004</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Avian infectious bronchitis virus (AIBV) is classified as a member of the genus coronavirus in the family coronaviridae. The enveloped virus has a positive-sense, single-stranded RNA genome of approximately 28 kilo-bases, which has a 5' cap structure and 3' polyadenylation tract. The complete genome sequence of infectious bronchitis virus (IBV), <i>Beijing isolate</i>, was determined by cloning sequencing and primer walking. The whole genome is 27733 nucleotides in length, has ten open reading frames: 5' -<i>orf1a-orf1ab-s-3a-3b-e-m-6a-6b-n-3'</i>. Alignments of the genome sequence of IBV <i>Beijing isolate</i> with those of two AIBV strains and one SARS coronavirus were performed respectively. The genome sequence of IBV <i>Beijing isolate</i> compared with that of the IBV strain <i>LX4</i> (uncompleted, 19440 bp in size) was 91.2% similarity. However, the full-length genome sequence of IBV <i>Beijing isolate</i> was 85.2% identity to that of IBV Strain <i>Beaudette</i>, and was only 50.8% homology to that of SARS coronavirus. The results showed that the genome of IBV has remarkable variation. And IBV <i>Beijing isolate</i> is not closely related to SARS coronavirus. Phylogenetic analyses based on the whole genome sequence, S protein, M protein and N protein, also showed that AIBV <i>Beijing isolate</i> is lone virus in group III and is distant from SARS coronavirus. In conclusion, this study will contribute to the studies of diagnosis and diseases control on IBV in China.</div></front></TEI><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Jin, Weiwu" sort="Jin, Weiwu" uniqKey="Jin W" first="Weiwu" last="Jin">Weiwu Jin</name></noRegion><name sortKey="Chen, Chen" sort="Chen, Chen" uniqKey="Chen C" first="Chen" last="Chen">Chen Chen</name><name sortKey="Chen, Fuyong" sort="Chen, Fuyong" uniqKey="Chen F" first="Fuyong" last="Chen">Fuyong Chen</name><name sortKey="Chen, Zhangliang" sort="Chen, Zhangliang" uniqKey="Chen Z" first="Zhangliang" last="Chen">Zhangliang Chen</name><name sortKey="Feng, Jidong" sort="Feng, Jidong" uniqKey="Feng J" first="Jidong" last="Feng">Jidong Feng</name><name sortKey="Gong, Yuanshi" sort="Gong, Yuanshi" uniqKey="Gong Y" first="Yuanshi" last="Gong">Yuanshi Gong</name><name sortKey="Li, Ning" sort="Li, Ning" uniqKey="Li N" first="Ning" last="Li">Ning Li</name><name sortKey="Sun, Qixin" sort="Sun, Qixin" uniqKey="Sun Q" first="Qixin" last="Sun">Qixin Sun</name><name sortKey="Wang, Ming" sort="Wang, Ming" uniqKey="Wang M" first="Ming" last="Wang">Ming Wang</name><name sortKey="Wu, Qingming" sort="Wu, Qingming" uniqKey="Wu Q" first="Qingming" last="Wu">Qingming Wu</name><name sortKey="Yang, Hanchun" sort="Yang, Hanchun" uniqKey="Yang H" first="Hanchun" last="Yang">Hanchun Yang</name><name sortKey="Yu, Jialin" sort="Yu, Jialin" uniqKey="Yu J" first="Jialin" last="Yu">Jialin Yu</name><name sortKey="Zhang, Ying" sort="Zhang, Ying" uniqKey="Zhang Y" first="Ying" last="Zhang">Ying Zhang</name><name sortKey="Zhao, Yiqiang" sort="Zhao, Yiqiang" uniqKey="Zhao Y" first="Yiqiang" last="Zhao">Yiqiang Zhao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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